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burrows–wheeler alignment tool bwa mem 0.7.17-r1188  (SourceForge net)

 
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    Structured Review

    SourceForge net burrows–wheeler alignment tool bwa mem 0.7.17-r1188
    Burrows–Wheeler Alignment Tool Bwa Mem 0.7.17 R1188, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/burrows%E2%80%93wheeler+aligner+(bwa)+mem+aligner/bwa+bioinformatics+tool/pm39908333-50-13-19
    Average 90 stars, based on 1 article reviews
    burrows–wheeler alignment tool bwa mem 0.7.17-r1188 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Modeling lung adenocarcinoma metastases using patient-derived organoids
    Article Snippet: All collected standard short-read WGS reads (tumor organoids, ∼3 billion reads; normal organoids, ∼2.1 billion reads) were aligned using the Burrows-Wheeler Aligner (BWA-MEM, version 0.7.8; http://bio-bwa.sourceforge.net ) to the GRCh37/hg19 ref. Harmonized analytic pipelines for somatic SNV or indel calling and loss-of-function mutation calling were applied to the full dataset of WGS profiles.

    Article Title: The Genetic Selection of HSPD1 and HSPE1 Reduce Inflammation of Liver and Spleen While Restraining the Growth and Development of Skeletal Muscle in Wuzhishan Pigs
    Article Snippet: The filtering high-quality PE150 reads were aligned to the pig reference genome (Sscrofa11.1) using the Burrows–Wheeler aligner (BWA mem) v.0.7.17 ( https://sourceforge.net/projects/bio-bwa/files/ , accessed on 5 November 2022), and the conversed bam files were sorted using SAMtools [ ].

    Article Title: Ovarian cancer mutational processes drive site-specific immune evasion
    Article Snippet: Sequencing reads were aligned to human genome reference GRCh37 (hg19) using the Burrows–Wheeler aligner (BWA-MEM) v0.7.17-r1188 ( https://sourceforge.net/projects/bio-bwa/ ).

    Article Title: Genome-Wide Association Analysis Combined With Quantitative Trait Loci Mapping and Dynamic Transcriptome Unveil the Genetic Control of Seed Oil Content in Brassica napus L.
    Article Snippet: A Burrows-Wheeler Aligner (BWA; parameter: mem -t 4 -k 32 -M; http://bio-bwa.sourceforge.net/ ) was used to align the clean reads against the B. napus “ Darmor-bzh ” reference genome ( https://www.genoscope.cns.fr/brassicanapus/data/ ; ; ).

    Article Title: Metagenomic insights into the microbe-mediated B and K 2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Article Snippet: Burrows-Wheeler Aligner (BWA-MEM, v.0.7.17, http://bio-bwa.sourceforge.net ) [ ] with maximal exact matches was used to map high-quality reads of the 370 digesta samples back to the RGMGC, and gene profiles were calculated in transcripts per million (TPM) [ ].

    Article Title: Current phenotypic and genetic spectrum of syndromic deafness in Tunisia: paving the way for precision auditory health
    Article Snippet: Alignment of sequencing reads to the reference genome (hg19) was carried out using the Burrows-Wheeler Aligner-MEM software (BWA-MEM version 1.1.1; https://bio-bwa.sourceforge.net ).

    Article Title: Deciphering the mechanisms involved in reduced sensitivity to azoles and fengycin lipopeptide in Venturia inaequalis.
    Article Snippet: The closest existing reference genome was determined using Kraken (Wood and Salzberg, 2014) and reads were mapped using the burrows-wheeler aligner (BWA) MEM algorithm (bio-bwa.sourceforge. net) to assess data quality.

    Article Title: The Genetic Selection of HSPD1 and HSPE1 Reduce Inflammation of Liver and Spleen While Restraining the Growth and Development of Skeletal Muscle in Wuzhishan Pigs.
    Article Snippet: The filtering high-quality PE150 reads were aligned to the pig reference genome (Sscrofa11.1) using the Burrows–Wheeler aligner (BWA mem) v.0.7.17 (https://sourceforge.net/projects/bio-bwa/files/, accessed on 5 November 2022), and the conversed bam files were sorted using SAMtools [26].

    Software:

    Article Title: Modeling lung adenocarcinoma metastases using patient-derived organoids
    Article Snippet: All collected standard short-read WGS reads (tumor organoids, ∼3 billion reads; normal organoids, ∼2.1 billion reads) were aligned using the Burrows-Wheeler Aligner (BWA-MEM, version 0.7.8; http://bio-bwa.sourceforge.net ) to the GRCh37/hg19 ref. Harmonized analytic pipelines for somatic SNV or indel calling and loss-of-function mutation calling were applied to the full dataset of WGS profiles.

    Article Title: The Genetic Selection of HSPD1 and HSPE1 Reduce Inflammation of Liver and Spleen While Restraining the Growth and Development of Skeletal Muscle in Wuzhishan Pigs
    Article Snippet: The filtering high-quality PE150 reads were aligned to the pig reference genome (Sscrofa11.1) using the Burrows–Wheeler aligner (BWA mem) v.0.7.17 ( https://sourceforge.net/projects/bio-bwa/files/ , accessed on 5 November 2022), and the conversed bam files were sorted using SAMtools [ ].

    Article Title: Ovarian cancer mutational processes drive site-specific immune evasion
    Article Snippet: Sequencing reads were aligned to human genome reference GRCh37 (hg19) using the Burrows–Wheeler aligner (BWA-MEM) v0.7.17-r1188 ( https://sourceforge.net/projects/bio-bwa/ ).

    Article Title: Genome-Wide Association Analysis Combined With Quantitative Trait Loci Mapping and Dynamic Transcriptome Unveil the Genetic Control of Seed Oil Content in Brassica napus L.
    Article Snippet: A Burrows-Wheeler Aligner (BWA; parameter: mem -t 4 -k 32 -M; http://bio-bwa.sourceforge.net/ ) was used to align the clean reads against the B. napus “ Darmor-bzh ” reference genome ( https://www.genoscope.cns.fr/brassicanapus/data/ ; ; ).

    Article Title: Metagenomic insights into the microbe-mediated B and K 2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants
    Article Snippet: Burrows-Wheeler Aligner (BWA-MEM, v.0.7.17, http://bio-bwa.sourceforge.net ) [ ] with maximal exact matches was used to map high-quality reads of the 370 digesta samples back to the RGMGC, and gene profiles were calculated in transcripts per million (TPM) [ ].

    Article Title: Current phenotypic and genetic spectrum of syndromic deafness in Tunisia: paving the way for precision auditory health
    Article Snippet: Alignment of sequencing reads to the reference genome (hg19) was carried out using the Burrows-Wheeler Aligner-MEM software (BWA-MEM version 1.1.1; https://bio-bwa.sourceforge.net ).

    Article Title: Deciphering the mechanisms involved in reduced sensitivity to azoles and fengycin lipopeptide in Venturia inaequalis.
    Article Snippet: The closest existing reference genome was determined using Kraken (Wood and Salzberg, 2014) and reads were mapped using the burrows-wheeler aligner (BWA) MEM algorithm (bio-bwa.sourceforge. net) to assess data quality.

    Article Title: The Genetic Selection of HSPD1 and HSPE1 Reduce Inflammation of Liver and Spleen While Restraining the Growth and Development of Skeletal Muscle in Wuzhishan Pigs.
    Article Snippet: The filtering high-quality PE150 reads were aligned to the pig reference genome (Sscrofa11.1) using the Burrows–Wheeler aligner (BWA mem) v.0.7.17 (https://sourceforge.net/projects/bio-bwa/files/, accessed on 5 November 2022), and the conversed bam files were sorted using SAMtools [26].



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